4JI1
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 16S rRNA | polymer | 1522 | 494170.8 | 1 | GenBank (M26923.1) | Thermus thermophilus | |
2 | B | RIBOSOMAL PROTEIN S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus | |
3 | C | RIBOSOMAL PROTEIN S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
4 | D | RIBOSOMAL PROTEIN S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
5 | E | RIBOSOMAL PROTEIN S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
6 | F | RIBOSOMAL PROTEIN S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus | |
7 | G | RIBOSOMAL PROTEIN S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus | |
8 | H | RIBOSOMAL PROTEIN S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus | |
9 | I | RIBOSOMAL PROTEIN S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus | |
10 | J | RIBOSOMAL PROTEIN S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus | |
11 | K | RIBOSOMAL PROTEIN S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus | |
12 | L | RIBOSOMAL PROTEIN S12 | polymer | 135 | 14982.9 | 1 | UniProt (F6DEQ7) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB | Thermus thermophilus | |
13 | M | RIBOSOMAL PROTEIN S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus | |
14 | N | RIBOSOMAL PROTEIN S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus | |
15 | O | RIBOSOMAL PROTEIN S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus | |
16 | P | RIBOSOMAL PROTEIN S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus | |
17 | Q | RIBOSOMAL PROTEIN S17 | polymer | 105 | 12325.7 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB | Thermus thermophilus | |
18 | R | RIBOSOMAL PROTEIN S18 | polymer | 88 | 10258.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus | |
19 | S | RIBOSOMAL PROTEIN S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus | |
20 | T | RIBOSOMAL PROTEIN S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus | |
21 | U | RIBOSOMAL PROTEIN THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus | |
22 | A | STREPTOMYCIN | non-polymer | 581.6 | 1 | Chemie (SRY) | |||
23 | A, N, P, B, Q... | MAGNESIUM ION | non-polymer | 24.3 | 325 | Chemie (MG) | |||
24 | N, D | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
25 | water | water | 18.0 | 733 | Chemie (HOH) |
Sequence modifications
A: 0 - 1544 (GenBank: M26923.1)
L: 1 - 135 (UniProt: F6DEQ7)
PDB | External Database | Details |
---|---|---|
C 1534 | A 2157 | conflict |
A 1535 | C 2158 | conflict |
PDB | External Database | Details |
---|---|---|
Leu 94 | Pro 94 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 21 |
Total formula weight | 783952.6 | |
Non-Polymers* | Number of molecules | 328 |
Total formula weight | 8611.5 | |
All* | Total formula weight | 792564.1 |