4JDZ
Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B | Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD | polymer | 445 | 48750.2 | 1 | UniProt (E5QTK7) In PDB | Staphylococcus aureus subsp. aureus | |
2 | A | Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD | polymer | 438 | 47841.3 | 1 | UniProt (E5QTK7) In PDB | Staphylococcus aureus subsp. aureus | |
3 | B, A | CALCIUM ION | non-polymer | 40.1 | 8 | Chemie (CA) | |||
4 | water | water | 18.0 | 496 | Chemie (HOH) |
Sequence modifications
B: 235 - 679 (UniProt: E5QTK7)
A: 236 - 673 (UniProt: E5QTK7)
PDB | External Database | Details |
---|---|---|
Ile 254 | Asp 254 | engineered mutation |
Ala 522 | Glu 522 | SEE REMARK 999 |
Ala 557 | Gly 557 | SEE REMARK 999 |
Ala 595 | Lys 595 | SEE REMARK 999 |
Ala 596 | Thr 596 | SEE REMARK 999 |
Ala 597 | Asn 597 | SEE REMARK 999 |
Ala 598 | Lys 598 | SEE REMARK 999 |
Ala 680 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 236 | Lys 236 | SEE REMARK 999 |
Ile 254 | Asp 254 | engineered mutation |
Ala 522 | Glu 522 | SEE REMARK 999 |
Ala 550 | Gly 557 | SEE REMARK 999 |
Ala 592 | Asp 593 | SEE REMARK 999 |
Ala 593 | Asn 594 | SEE REMARK 999 |
Ala 594 | Lys 595 | SEE REMARK 999 |
Ala 595 | Thr 596 | SEE REMARK 999 |
Ala 596 | Asn 597 | SEE REMARK 999 |
Ala 640 | Asn 641 | SEE REMARK 999 |
Ala 672 | Lys 672 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 96591.5 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 320.6 | |
All* | Total formula weight | 96912.1 |