4IZJ
Crystal structure of yellowtail ascites virus VP4 protease with a wild-type active site reveals acyl-enzyme complexes and product complexes.
Replaces: 3R0BEntity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E | Yellowtail Ascites Virus (YAV) VP4 protease | polymer | 210 | 22344.4 | 2 | UniProt (P89521) Pfam (PF01768) In PDB | Yellowtail ascites virus | |
2 | B, C | Yellowtail Ascites Virus (YAV) VP4 protease | polymer | 210 | 22328.4 | 2 | UniProt (P89521) Pfam (PF01768) In PDB | Yellowtail ascites virus | |
3 | D | Yellowtail Ascites Virus (YAV) VP4 protease | polymer | 210 | 22328.4 | 1 | UniProt (P89521) Pfam (PF01768) In PDB | Yellowtail ascites virus | |
4 | A, B, C, D, E | BETA-MERCAPTOETHANOL | non-polymer | 78.1 | 6 | Chemie (BME) | |||
5 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
6 | D | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
7 | water | water | 18.0 | 271 | Chemie (HOH) |
Sequence modifications
A, E: 508 - 716 (UniProt: P89521)
B, C: 508 - 716 (UniProt: P89521)
D: 508 - 716 (UniProt: P89521)
PDB | External Database | Details |
---|---|---|
Met 507 | - | initiating methionine |
Asp 616 | Asn 616 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Met 507 | - | initiating methionine |
Asp 616 | Asn 616 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Met 507 | - | initiating methionine |
Asp 616 | Asn 616 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 111674.1 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 585.2 | |
All* | Total formula weight | 112259.3 |