4IRJ
Structure of the mouse CD1d-4ClPhC-alpha-GalCer-iNKT TCR complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32632.7 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
2 | B | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
3 | C | Valpha14 (mouse variable domain, human constant domain) | polymer | 209 | 23055.6 | 1 | Mus musculus Homo sapiens (mouse human) | ||
4 | D | Vbeta8.2 (mouse variable domain, human constant domain) | polymer | 241 | 27027.0 | 1 | Mus musculus Homo sapiens (mouse human) | ||
5 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
6 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
7 | A | N-[(2S,3S,4R)-1-({6-O-[(4-chlorophenyl)carbamoyl]-alpha-D-galactopyranosyl}oxy)-3,4-dihydroxyoctadecan-2-yl]hexacosanamide | non-polymer | 1011.9 | 1 | Chemie (1L9) | |||
8 | water | water | 18.0 | 13 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | conflict |
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 94375.6 | |
Branched | Number of molecules | 1 |
Total formula weight | 570.5 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 1454.3 | |
All* | Total formula weight | 96400.5 |