4II9
Crystal structure of Weissella viridescens FemXVv non-ribosomal amino acid transferase in complex with a peptidyl-RNA conjugate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | FemX | polymer | 343 | 39212.9 | 1 | UniProt (Q9EY50) | Weissella viridescens | |
| 2 | B (B) | 5-mer peptide | polymer | 5 | 463.5 | 1 | |||
| 3 | C (C) | RNA (5'-R(P*CP*CP*(A9Z))-3') | polymer | 3 | 973.7 | 1 | |||
| 4 | D (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) PubChem (753) | |||
| 5 | E (B) | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 1 | Chemie (UDP) PubChem (25323044) PubChem (25323048) PubChem (44298965) PubChem (53486216) PubChem (57448939) PubChem (60098857) PubChem (1158) PubChem (6031) PubChem (91746160) PubChem (92332560) PubChem (92332561) PubChem (92332562) PubChem (92332563) PubChem (93088131) PubChem (93630083) PubChem (3084486) PubChem (6101632) PubChem (6604175) PubChem (11811538) PubChem (12049241) | |||
| 6 | F (B) | N-acetyl-alpha-muramic acid | non-polymer | 293.3 | 1 | Chemie (MUB) PubChem (71191327) PubChem (23988681) PubChem (45934204) PubChem (51399526) PubChem (2724352) PubChem (58852883) PubChem (6604336) PubChem (439789) PubChem (440822) PubChem (92215929) PubChem (92332568) PubChem (92332569) PubChem (92336176) PubChem (94936197) PubChem (96559697) PubChem (542212) PubChem (5462244) PubChem (6323218) PubChem (6713944) PubChem (7058171) PubChem (135342243) PubChem (138107680) PubChem (139024455) PubChem (12917651) PubChem (12917652) PubChem (154701375) | |||
| 7 | G, H, I (A, B, C) | water | water | 18.0 | 296 | Chemie (HOH) |
Sequence modifications
A: 0 - 335 (UniProt: Q9EY50)
| PDB | External Database | Details |
|---|---|---|
| Gly 336 | - | expression tag |
| His 337 | - | expression tag |
| His 338 | - | expression tag |
| His 339 | - | expression tag |
| His 340 | - | expression tag |
| His 341 | - | expression tag |
| His 342 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 40650.1 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 789.5 | |
| All* | Total formula weight | 41439.7 |
