4HON
Crystal structure of human JMJD2D/KDM4D in complex with an H3K9me3 peptide and 2-oxoglutarate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Lysine-specific demethylase 4D | polymer | 330 | 38137.2 | 2 | UniProt (Q6B0I6) Pfam (PF02375) Pfam (PF02373) | Homo sapiens (human) | JmjC domain-containing histone demethylation protein 3D, Jumonji domain-containing protein 2D |
| 2 | C, D (F, G) | Histone H3 Peptide | polymer | 10 | 1021.2 | 2 | UniProt (by SIFTS) (P68431) | Homo sapiens | |
| 3 | E, W (A, B) | 2-OXOGLUTARIC ACID | non-polymer | 146.1 | 2 | Chemie (AKG) | |||
| 4 | F, X (A, B) | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) | |||
| 5 | G, Y (A, B) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 6 | AA, BA, H, I, J... (B, A) | THIOCYANATE ION | non-polymer | 58.1 | 6 | Chemie (SCN) | |||
| 7 | CA, DA, EA, FA, K... (B, A) | NITRATE ION | non-polymer | 62.0 | 12 | Chemie (NO3) | |||
| 8 | GA, S, T, U, V (B, A) | 1,3-PROPANDIOL | non-polymer | 76.1 | 5 | Chemie (PDO) | |||
| 9 | HA, IA, JA (A, B, F) | water | water | 18.0 | 408 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 78316.7 | |
| Non-Polymers* | Number of molecules | 29 |
| Total formula weight | 2013.4 | |
| All* | Total formula weight | 80330.1 |
