4HON
Crystal structure of human JMJD2D/KDM4D in complex with an H3K9me3 peptide and 2-oxoglutarate
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Lysine-specific demethylase 4D | polymer | 330 | 38137.2 | 2 | UniProt (Q6B0I6) Pfam (PF02375) Pfam (PF02373) In PDB | Homo sapiens (human) | JmjC domain-containing histone demethylation protein 3D, Jumonji domain-containing protein 2D |
| 2 | F, G | Histone H3 Peptide | polymer | 10 | 1021.2 | 2 | UniProt (by SIFTS) (P68431) In PDB | Homo sapiens | |
| 3 | A, B | 2-OXOGLUTARIC ACID | non-polymer | 146.1 | 2 | Chemie (AKG) | |||
| 4 | A, B | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) | |||
| 5 | A, B | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 6 | B, A | THIOCYANATE ION | non-polymer | 58.1 | 6 | Chemie (SCN) | |||
| 7 | B, A | NITRATE ION | non-polymer | 62.0 | 12 | Chemie (NO3) | |||
| 8 | B, A | 1,3-PROPANDIOL | non-polymer | 76.1 | 5 | Chemie (PDO) | |||
| 9 | water | water | 18.0 | 408 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 78316.7 | |
| Non-Polymers* | Number of molecules | 29 |
| Total formula weight | 2013.4 | |
| All* | Total formula weight | 80330.1 |
