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4F97

Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP and validoxylamine A 7'-phosphate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
VldEpolymer49755006.52UniProt (Q15JG1)Streptomyces hygroscopicus subsp. limoneuspseudo-glycosyltransferase
2C, H
(A, B)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
PubChem (136073927)
PubChem (135398619)
PubChem (135402030)
PubChem (135431654)
PubChem (135566337)
PubChem (135760556)
PubChem (136026707)
PubChem (136053418)
PubChem (136663964)
PubChem (136664748)
PubChem (136759848)
PubChem (136759849)
PubChem (136759850)
PubChem (136836636)
PubChem (136847074)
PubChem (172898537)
3D, G
(A, B)
[(1R,2R,3S,4S,5S)-2,3,4-TRIHYDROXY-5-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3-(HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}CYCLOHEXYL]METHYL DIHYDROGEN PHOSPHATEnon-polymer415.32Chemie (VDO)
PubChem (44629416)
PubChem (75059171)
4E, I
(A, B)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
5F, J
(A, B)
CHLORIDE IONnon-polymer35.52Chemie (CL)
PubChem (312)
6K, L
(A, B)
waterwater18.0488Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight110013.1
Non-Polymers*Number of molecules8
Total formula weight1912.1
All*Total formula weight111925.2
*Water molecules are not included.

251422

PDB entries from 2026-04-01

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