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4F97

Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP and validoxylamine A 7'-phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005992biological_processtrehalose biosynthetic process
A0016740molecular_functiontransferase activity
A0016758molecular_functionhexosyltransferase activity
A0017000biological_processantibiotic biosynthetic process
B0003824molecular_functioncatalytic activity
B0005992biological_processtrehalose biosynthetic process
B0016740molecular_functiontransferase activity
B0016758molecular_functionhexosyltransferase activity
B0017000biological_processantibiotic biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE GDP A 501
ChainResidue
AARG290
AASN386
ALEU387
ASER388
AGLU391
AVDO502
AHOH645
AHOH674
AHOH676
AHOH683
AHOH689
ALYS295
AHOH706
AARG321
AASN323
AASP360
AASN361
AASP362
AVAL363
ATHR366

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE VDO A 502
ChainResidue
AASP158
AHIS182
AILE183
AARG290
AASN325
AARG326
AASP383
AGLY384
AGLN385
AASN386
AGDP501
AHOH804

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 503
ChainResidue
AARG218
ATRP219
AGLU406
ATHR407
ACYS408
AGLU412
AHOH714

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 504
ChainResidue
ATYR110
ASER187
BARG114
BCL504

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE VDO B 501
ChainResidue
BASP158
BHIS182
BILE183
BPHE215
BARG290
BASN325
BARG326
BASP383
BGLY384
BGLN385
BASN386
BGDP502
BHOH740
BHOH770

site_idAC6
Number of Residues19
DetailsBINDING SITE FOR RESIDUE GDP B 502
ChainResidue
BARG290
BLYS295
BARG321
BASN323
BASP360
BASN361
BASP362
BVAL363
BTHR366
BASN386
BLEU387
BSER388
BGLU391
BVDO501
BHOH659
BHOH667
BHOH684
BHOH692
BHOH693

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 503
ChainResidue
BARG218
BTRP219
BGLU406
BTHR407
BCYS408
BGLU412
BHOH617
BHOH672

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 504
ChainResidue
AARG114
ACL504
BTYR110
BSER187

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000305|PubMed:23028689, ECO:0007744|PDB:4F97
ChainResidueDetails
AASP158
AHIS182
AASN325
BASP158
BHIS182
BASN325

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000305|PubMed:23028689, ECO:0007744|PDB:4F96, ECO:0007744|PDB:4F97, ECO:0007744|PDB:4F9F
ChainResidueDetails
AARG290
BTHR366
BLEU387
BGLU391
ALYS295
AASN361
ATHR366
ALEU387
AGLU391
BARG290
BLYS295
BASN361

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000305|PubMed:23028689, ECO:0007744|PDB:4F97, ECO:0007744|PDB:4F9F
ChainResidueDetails
AARG321
AASP383
BARG321
BASP383

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PDB entries from 2024-10-16

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