4F7E
Crystal structure of bovine CD1d with bound C16:0-alpha-galactosyl ceramide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | CD1D antigen, d polypeptide | polymer | 283 | 32460.6 | 1 | UniProt (A1L565) Pfam (PF16497) Pfam (PF07654) | Bos taurus (bovine) | T cell surface glycoprotein CD1d antigen |
| 2 | B (B) | Beta-2-microglobulin | polymer | 98 | 11653.1 | 1 | UniProt (P01888) Pfam (PF07654) | Bos taurus (bovine) | Lactollin |
| 3 | C (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | D (A) | N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]hexadecanamide | non-polymer | 718.1 | 1 | Chemie (0SH) | |||
| 5 | E (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 6 | F (B) | SULFATE ION | non-polymer | 96.1 | 1 | Chemie (SO4) | |||
| 7 | G, H (A, B) | water | water | 18.0 | 26 | Chemie (HOH) |
Sequence modifications
A: 1 - 277 (UniProt: A1L565)
| PDB | External Database | Details |
|---|---|---|
| His 278 | - | expression tag |
| His 279 | - | expression tag |
| His 280 | - | expression tag |
| His 281 | - | expression tag |
| His 282 | - | expression tag |
| His 283 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 44113.7 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 1035.3 | |
| All* | Total formula weight | 45573.4 |
