4EZH
the crystal structure of KDM6B bound with H3K27me3 peptide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Lysine-specific demethylase 6B | polymer | 486 | 54886.0 | 2 | UniProt (Q5NCY0) Pfam (PF02373) Pfam (PF21322) Pfam (PF21326) In PDB | Mus musculus (mouse) | JmjC domain-containing protein 3, Jumonji domain-containing protein 3 |
2 | C, D | SYNTHESIZED methylation peptide | polymer | 11 | 1030.2 | 2 | UniProt (by SIFTS) (P68431) In PDB | synthetic construct | |
3 | A, B | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) | |||
4 | A, B | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
5 | A, B | N-OXALYLGLYCINE | non-polymer | 147.1 | 2 | Chemie (OGA) | |||
6 | water | water | 18.0 | 82 | Chemie (HOH) |
Sequence modifications
A, B: 1157 - 1295 (UniProt: Q5NCY0)
A, B: 1323 - 1643 (UniProt: Q5NCY0)
A, B: 1323 - 1643 (UniProt: Q5NCY0)
PDB | External Database | Details |
---|---|---|
Leu 1296 | - | SEE REMARK 999 |
Glu 1297 | - | SEE REMARK 999 |
Val 1298 | - | SEE REMARK 999 |
Leu 1299 | - | SEE REMARK 999 |
Phe 1300 | - | SEE REMARK 999 |
Gln 1301 | - | SEE REMARK 999 |
Gly 1303 | - | SEE REMARK 999 |
Pro 1304 | - | SEE REMARK 999 |
Thr 1305 | - | SEE REMARK 999 |
Lys 1306 | - | SEE REMARK 999 |
Ala 1307 | - | SEE REMARK 999 |
Ala 1308 | - | SEE REMARK 999 |
Arg 1309 | - | SEE REMARK 999 |
Lys 1310 | - | SEE REMARK 999 |
Ser 1311 | - | SEE REMARK 999 |
Ala 1312 | - | SEE REMARK 999 |
Pro 1313 | - | SEE REMARK 999 |
Ala 1314 | - | SEE REMARK 999 |
Thr 1315 | - | SEE REMARK 999 |
Gly 1316 | - | SEE REMARK 999 |
Gly 1317 | - | SEE REMARK 999 |
Gly 1318 | - | SEE REMARK 999 |
Ser 1319 | - | SEE REMARK 999 |
Ser 1320 | - | SEE REMARK 999 |
Gly 1321 | - | SEE REMARK 999 |
Ser 1322 | - | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 111832.3 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 542.4 | |
All* | Total formula weight | 112374.7 |