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4EZH

the crystal structure of KDM6B bound with H3K27me3 peptide

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BLysine-specific demethylase 6Bpolymer48654886.02UniProt (Q5NCY0)
Pfam (PF02373)
Pfam (PF21322)
Pfam (PF21326)
In PDB
Mus musculus (mouse)JmjC domain-containing protein 3, Jumonji domain-containing protein 3
2C, DSYNTHESIZED methylation peptidepolymer111030.22UniProt (by SIFTS) (P68431)
In PDB
synthetic construct
3A, BNICKEL (II) IONnon-polymer58.72Chemie (NI)
4A, BZINC IONnon-polymer65.42Chemie (ZN)
5A, BN-OXALYLGLYCINEnon-polymer147.12Chemie (OGA)
6waterwater18.082Chemie (HOH)
Sequence modifications
A, B: 1157 - 1295 (UniProt: Q5NCY0)
A, B: 1323 - 1643 (UniProt: Q5NCY0)
PDBExternal DatabaseDetails
Leu 1296-SEE REMARK 999
Glu 1297-SEE REMARK 999
Val 1298-SEE REMARK 999
Leu 1299-SEE REMARK 999
Phe 1300-SEE REMARK 999
Gln 1301-SEE REMARK 999
Gly 1303-SEE REMARK 999
Pro 1304-SEE REMARK 999
Thr 1305-SEE REMARK 999
Lys 1306-SEE REMARK 999
Ala 1307-SEE REMARK 999
Ala 1308-SEE REMARK 999
Arg 1309-SEE REMARK 999
Lys 1310-SEE REMARK 999
Ser 1311-SEE REMARK 999
Ala 1312-SEE REMARK 999
Pro 1313-SEE REMARK 999
Ala 1314-SEE REMARK 999
Thr 1315-SEE REMARK 999
Gly 1316-SEE REMARK 999
Gly 1317-SEE REMARK 999
Gly 1318-SEE REMARK 999
Ser 1319-SEE REMARK 999
Ser 1320-SEE REMARK 999
Gly 1321-SEE REMARK 999
Ser 1322-SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight111832.3
Non-Polymers*Number of molecules6
Total formula weight542.4
All*Total formula weight112374.7
*Water molecules are not included.

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PDB entries from 2024-06-12

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