4DV5
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16S rRNA | polymer | 1522 | 494186.8 | 1 | GenBank (M26923.1) | Thermus thermophilus | |
| 2 | B (B) | ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 3 | C (C) | ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 4 | D (D) | ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 5 | E (E) | ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 6 | F (F) | ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | |
| 7 | G (G) | ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 8 | H (H) | ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 9 | I (I) | ribosomal protein S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) | Thermus thermophilus | |
| 10 | J (J) | ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 11 | K (K) | ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 12 | L (L) | ribosomal protein S12 | polymer | 135 | 14966.8 | 1 | UniProt (F6DEQ7) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) | Thermus thermophilus | |
| 13 | M (M) | ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 14 | N (N) | ribosomal protein S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 15 | O (O) | ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 16 | P (P) | ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 17 | Q (Q) | ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 18 | R (R) | ribosomal protein S18 | polymer | 88 | 10258.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) | Thermus thermophilus | |
| 19 | S (S) | ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 20 | T (T) | ribosomal protein S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) | Thermus thermophilus | |
| 21 | U (U) | ribosomal protein THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus | |
| 22 | V (A) | STREPTOMYCIN | non-polymer | 581.6 | 1 | Chemie (SRY) | |||
| 23 | AA, AB, AC, AD, AE... (A, M, N, P, Q...) | MAGNESIUM ION | non-polymer | 24.3 | 273 | Chemie (MG) | |||
| 24 | CK, RJ (N, D) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 25 | LK, MK, NK, OK, PK... (A, B, D, E, L...) | water | water | 18.0 | 389 | Chemie (HOH) |
Sequence modifications
A: 0 - 1544 (GenBank: M26923.1)
Q: 1 - 105 (UniProt: Q5SHP7)
| PDB | External Database | Details |
|---|---|---|
| G 914 | A 1537 | ENGINEERED MUTATION |
| C 1534 | A 2157 | CONFLICT |
| A 1535 | C 2158 | CONFLICT |
| PDB | External Database | Details |
|---|---|---|
| Gln 96 | Glu 96 | CONFLICT |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 783951.6 | |
| Non-Polymers* | Number of molecules | 276 |
| Total formula weight | 7347.7 | |
| All* | Total formula weight | 791299.3 |
