4DR2
Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with multiple copies of paromomycin molecules bound
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | 16S rRNA | polymer | 1522 | 494170.8 | 1 | GenBank (M26923.1) | Thermus thermophilus | |
| 2 | B | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus | |
| 3 | C | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
| 4 | D | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
| 5 | E | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
| 6 | F | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus | |
| 7 | G | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus | |
| 8 | H | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus | |
| 9 | I | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 1 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus | |
| 10 | J | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus | |
| 11 | K | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus | |
| 12 | L | 30S ribosomal protein S12 | polymer | 135 | 14966.8 | 1 | UniProt (F6DEQ7) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB | Thermus thermophilus | |
| 13 | M | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus | |
| 14 | N | 30S ribosomal protein S14 | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus | |
| 15 | O | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus | |
| 16 | P | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus | |
| 17 | Q | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (Q5SHP7) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) In PDB | Thermus thermophilus | |
| 18 | R | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 1 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus | |
| 19 | S | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus | |
| 20 | T | 30S ribosomal protein S20 | polymer | 106 | 11736.1 | 1 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus | |
| 21 | U | 30S ribosomal protein THX | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus | |
| 22 | A | PAROMOMYCIN | non-polymer | 615.6 | 17 | Chemie (PAR) | |||
| 23 | A, D, E, F, H... | MAGNESIUM ION | non-polymer | 24.3 | 321 | Chemie (MG) | |||
| 24 | D, N | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 25 | water | water | 18.0 | 537 | Chemie (HOH) |
Sequence modifications
A: 0 - 1544 (GenBank: M26923.1)
Q: 1 - 105 (UniProt: Q5SHP7)
| PDB | External Database | Details |
|---|---|---|
| C 1534 | A 2157 | CONFLICT |
| A 1535 | C 2158 | CONFLICT |
| PDB | External Database | Details |
|---|---|---|
| Gln 96 | Glu 96 | CONFLICT |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 783935.6 | |
| Non-Polymers* | Number of molecules | 340 |
| Total formula weight | 18398.4 | |
| All* | Total formula weight | 802334.0 |
