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4DQI

Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and dCTP (paired with dG of template)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, DDNA polymerase Ipolymer59267474.32UniProt (Q5KWC1)
Pfam (PF22619)
Pfam (PF00476)
In PDB
Geobacillus kaustophilus
2B, EDNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3')polymer92635.82Synthetic construct
3C, FDNA (5'-D(*C*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3')polymer134056.62Synthetic construct
4A, DMAGNESIUM IONnon-polymer24.32Chemie (MG)
5A, D2'-DEOXYCYTIDINE-5'-TRIPHOSPHATEnon-polymer467.23Chemie (DCP)
6A, DSULFATE IONnon-polymer96.12Chemie (SO4)
7waterwater18.01636Chemie (HOH)
Sequence modifications
A, D: 285 - 876 (UniProt: Q5KWC1)
PDBExternal DatabaseDetails
Ala 598Asp 600engineered mutation
His 823Arg 825SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight148333.4
Non-Polymers*Number of molecules7
Total formula weight1642.2
All*Total formula weight149975.6
*Water molecules are not included.

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PDB entries from 2024-07-10

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