4DKV
Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with NBD-10007
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | HIV-1 gp120 core | polymer | 353 | 39160.4 | 2 | UniProt (Q0ED31) Pfam (PF00516) UniProt (by SIFTS) (A0A0M3KKW9) In PDB | Human immunodeficiency virus 1 | |
2 | A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 20 | Chemie (NAG) | |||
3 | A, B | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 2 | Chemie (EPE) | |||
4 | A, B | N-(4-chlorophenyl)-N'-{(S)-[5-(2-hydroxyethyl)-4-methyl-1,3-thiazol-2-yl][(2S)-piperidin-2-yl]methyl}ethanediamide | non-polymer | 437.0 | 2 | Chemie (0KW) | |||
5 | water | water | 18.0 | 196 | Chemie (HOH) |
Sequence modifications
A, B: 44 - 123 (UniProt: Q0ED31)
A, B: 199 - 301 (UniProt: Q0ED31)
A, B: 324 - 492 (UniProt: Q0ED31)
A, B: 199 - 301 (UniProt: Q0ED31)
PDB | External Database | Details |
---|---|---|
Gly 124 | - | linker |
Gly 198 | - | linker |
PDB | External Database | Details |
---|---|---|
Gly 318 | - | linker |
Gly 319 | - | linker |
Ser 320 | - | linker |
Gly 321 | - | linker |
Ser 322 | - | linker |
Gly 323 | - | linker |
Ser 375 | His 375 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 78320.7 | |
Non-Polymers* | Number of molecules | 24 |
Total formula weight | 5774.7 | |
All* | Total formula weight | 84095.4 |