4C8D
Crystal structure of JmjC domain of human histone 3 Lysine-specific demethylase 3B (KDM3B)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | LYSINE-SPECIFIC DEMETHYLASE 3B | polymer | 349 | 40278.5 | 1 | UniProt (Q7LBC6) Pfam (PF02373) | HOMO SAPIENS (HUMAN) | JMJC DOMAIN OF HUMAN HISTONE 3 LYSINE-SPECIFIC DEMETHYLASE 3 JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2B, JUMONJI DOMAIN-CONTAINING PROTEIN 1B, NUCLEAR PROTEIN 5QNCA |
| 2 | B (A) | MANGANESE (II) ION | non-polymer | 54.9 | 1 | Chemie (MN) | |||
| 3 | C (A) | N-OXALYLGLYCINE | non-polymer | 147.1 | 1 | Chemie (OGA) | |||
| 4 | D (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 5 | E, F (A) | ACETATE ION | non-polymer | 59.0 | 2 | Chemie (ACT) | |||
| 6 | G (A) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 7 | H (A) | water | water | 18.0 | 69 | Chemie (HOH) |
Sequence modifications
A: 1380 - 1720 (UniProt: Q7LBC6)
| PDB | External Database | Details |
|---|---|---|
| Met 1379 | - | expression tag |
| Ala 1721 | - | expression tag |
| Gly 1722 | - | expression tag |
| Asn 1723 | - | expression tag |
| Leu 1724 | - | expression tag |
| Tyr 1725 | - | expression tag |
| Phe 1726 | - | expression tag |
| Gln 1727 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 40278.5 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 447.7 | |
| All* | Total formula weight | 40726.2 |
