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3ZFS

Cryo-EM structure of the F420-reducing NiFe-hydrogenase from a methanogenic archaeon with bound substrate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
F420-REDUCING HYDROGENASE, SUBUNIT ALPHApolymer40544873.31UniProt (D9PYF9)
Pfam (PF00374)
METHANOTHERMOBACTER MARBURGENSISFRHA, COENZYME F420 HYDROGENASE ALPHA SUBUNIT
2B
(B)
F420-REDUCING HYDROGENASE, SUBUNIT GAMMApolymer27530267.81UniProt (D9PYF7)
Pfam (PF01058)
Pfam (PF12838)
METHANOTHERMOBACTER MARBURGENSISFRHG, COENZYME F420 HYDROGENASE GAMMA SUBUNIT
3C
(C)
F420-REDUCING HYDROGENASE, SUBUNIT BETApolymer28130778.81UniProt (D9PYF6)
Pfam (PF04422)
Pfam (PF04432)
METHANOTHERMOBACTER MARBURGENSISFRHB, COENZYME F420 HYDROGENASE BETA SUBUNIT
4D
(A)
CARBONMONOXIDE-(DICYANO) IRONnon-polymer135.91Chemie (FCO)
5E
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
6F
(A)
FE (II) IONnon-polymer55.81Chemie (FE2)
7G, H, I, K
(B, C)
IRON/SULFUR CLUSTERnon-polymer351.64Chemie (SF4)
8J
(C)
COENZYME F420non-polymer773.61Chemie (F42)
9L
(C)
FLAVIN-ADENINE DINUCLEOTIDEnon-polymer785.51Chemie (FAD)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight105919.8
Non-Polymers*Number of molecules9
Total formula weight3216.1
All*Total formula weight109136.0
*Water molecules are not included.

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PDB entries from 2025-07-30

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