3ZD7
Snapshot 3 of RIG-I scanning on RNA duplex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 | polymer | 696 | 79711.8 | 1 | UniProt (O95786) Pfam (PF00270) Pfam (PF18119) Pfam (PF00271) Pfam (PF11648) In PDB | HOMO SAPIENS (HUMAN) | DEAD BOX PROTEIN 58, RIG-I-LIKE RECEPTOR 1, RLR-1, RETINOIC ACID-INDUCIBLE GENE 1 PROTEIN, RIG-1, RETINOIC ACID-INDUCIBLE GENE I PROTEIN, RIG-I |
| 2 | C, D | RNA DUPLEX | polymer | 10 | 3207.0 | 2 | SYNTHETIC CONSTRUCT | ||
| 3 | A | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 4 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 5 | A | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 6 | water | water | 18.0 | 60 | Chemie (HOH) |
Sequence modifications
A: 230 - 925 (UniProt: O95786)
| PDB | External Database | Details |
|---|---|---|
| Asn 306 | Gln 261 | conflict |
| Ser 499 | Ile 454 | conflict |
| Leu 696 | Ala 651 | conflict |
| Asp 828 | Glu 783 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 86125.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 516.9 | |
| All* | Total formula weight | 86642.7 |
