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3W6P

Crystal structure of human Dlp1 in complex with GDP.AlF4

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Dynamin-1-like proteinpolymer36440542.52UniProt (O00429)
Pfam (PF00350)
Pfam (PF01031)
Homo sapiens (human)Dnm1p/Vps1p-like protein, DVLP, Dynamin family member proline-rich carboxyl-terminal domain less, Dymple, Dynamin-like protein, Dynamin-like protein 4, Dynamin-like protein IV, HdynIV, Dynamin-related protein 1
2C, G
(A, B)
GUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
3D, H
(A, B)
TETRAFLUOROALUMINATE IONnon-polymer103.02Chemie (ALF)
4E, I
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
5F, J
(A, B)
SODIUM IONnon-polymer23.02Chemie (NA)
6K
(B)
CALCIUM IONnon-polymer40.11Chemie (CA)
7L, M
(B)
TETRAETHYLENE GLYCOLnon-polymer194.22Chemie (PG4)
8N, O
(A, B)
waterwater18.0704Chemie (HOH)
Sequence modifications
A, B: 1 - 329 (UniProt: O00429)
PDBExternal DatabaseDetails
Gly -1-expression tag
Pro 0-expression tag
A, B: 709 - 736 (UniProt: O00429)
PDBExternal DatabaseDetails
His 330-linker
Gly 331-linker
Thr 332-linker
Asp 333-linker
Ser 334-linker
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight81085.0
Non-Polymers*Number of molecules11
Total formula weight1615.5
All*Total formula weight82700.4
*Water molecules are not included.

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PDB entries from 2025-06-25

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