3VZD
Crystal structure of Sphingosine Kinase 1 with inhibitor and ADP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Sphingosine kinase 1 | polymer | 361 | 39917.5 | 6 | UniProt (Q9NYA1) Pfam (PF00781) | homo sapiens | SK 1, SPK 1 |
| 2 | G, H, I, M, Q... (A, B, C, D, E...) | 4-{[4-(4-chlorophenyl)-1,3-thiazol-2-yl]amino}phenol | non-polymer | 302.8 | 7 | Chemie (UUL) | |||
| 3 | J (B) | PYROPHOSPHATE 2- | non-polymer | 176.0 | 1 | Chemie (POP) | |||
| 4 | K, O, T (B, C, E) | MAGNESIUM ION | non-polymer | 24.3 | 3 | Chemie (MG) | |||
| 5 | L, P, U (B, C, E) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 6 | N, S (C, E) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 2 | Chemie (ADP) | |||
| 7 | AA, BA, W, X, Y... (E, F, A, B, C...) | water | water | 18.0 | 358 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 9 - 364 (UniProt: Q9NYA1)
| PDB | External Database | Details |
|---|---|---|
| Gly 4 | - | expression tag |
| Ala 5 | - | expression tag |
| Met 6 | - | expression tag |
| Gly 7 | - | expression tag |
| Ser 8 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 239504.8 | |
| Non-Polymers* | Number of molecules | 16 |
| Total formula weight | 3329.1 | |
| All* | Total formula weight | 242833.9 |
