3VK7
Crystal structure of DNA-glycosylase bound to DNA containing 5-Hydroxyuracil
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Probable formamidopyrimidine-DNA glycosylase | polymer | 295 | 34581.4 | 2 | UniProt (Q5UQ00) Pfam (PF01149) Pfam (PF06831) Pfam (PF21025) In PDB | Acanthamoeba polyphaga mimivirus (APMV) | Fapy-DNA glycosylase, DNA-(apurinic or apyrimidinic site) lyase, AP lyase |
2 | C, E | DNA (5'-D(*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*G)-3') | polymer | 13 | 4056.6 | 2 | |||
3 | D, F | DNA (5'-D(*CP*GP*TP*CP*CP*AP*(OHU)P*GP*TP*CP*TP*AP*C)-3') | polymer | 13 | 3904.5 | 2 | |||
4 | B, D | FORMIC ACID | non-polymer | 46.0 | 2 | Chemie (FMT) | |||
5 | water | water | 18.0 | 456 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 287 (UniProt: Q5UQ00)
PDB | External Database | Details |
---|---|---|
Gln 3 | Glu 3 | engineered mutation |
Leu 288 | - | expression tag |
Glu 289 | - | expression tag |
His 290 | - | expression tag |
His 291 | - | expression tag |
His 292 | - | expression tag |
His 293 | - | expression tag |
His 294 | - | expression tag |
His 295 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 85085.1 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 92.0 | |
All* | Total formula weight | 85177.1 |