3ULA
Crystal structure of the TV3 mutant F63W-MD-2-Eritoran complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | Toll-like receptor 4, Variable lymphocyte receptor B | polymer | 279 | 31426.0 | 2 | UniProt (O00206) UniProt (Q4G1L2) Pfam (PF13855) Pfam (PF12799) | Homo sapiens (human Inshore hagfish) | hToll |
| 2 | B, D (B, D) | Lymphocyte antigen 96 | polymer | 142 | 16328.9 | 2 | UniProt (Q9Y6Y9) Pfam (PF02221) | Homo sapiens (human) | Ly-96, ESOP-1, Protein MD-2 |
| 3 | E, F (E, F) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 4 | G, H, K, L (A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
| 5 | I, J (A, C) | 3-O-DECYL-2-DEOXY-6-O-{2-DEOXY-3-O-[(3R)-3-METHOXYDECYL]-6-O-METHYL-2-[(11Z)-OCTADEC-11-ENOYLAMINO]-4-O-PHOSPHONO-BETA-D-GLUCOPYRANOSYL}-2-[(3-OXOTETRADECANOYL)AMINO]-1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE | non-polymer | 1313.7 | 2 | Chemie (E55) PubChem (44547433) PubChem (53398664) PubChem (58675438) PubChem (59806266) PubChem (58675422) PubChem (58767051) PubChem (59115774) PubChem (59080379) PubChem (60127991) PubChem (88561915) PubChem (91013214) PubChem (91013446) PubChem (9941865) PubChem (10080126) PubChem (10170989) PubChem (88561736) PubChem (89243091) PubChem (3083506) PubChem (91049425) PubChem (91286554) PubChem (91460055) PubChem (6602298) PubChem (122173793) PubChem (6912404) PubChem (10192393) PubChem (11240371) PubChem (139507925) PubChem (137326959) |
Sequence modifications
A, C: 27 - 228 (UniProt: O00206)
A, C: 229 - 302 (UniProt: Q4G1L2)
B, D: 19 - 158 (UniProt: Q9Y6Y9)
| PDB | External Database | Details |
|---|---|---|
| Gly 25 | - | expression tag |
| Ser 26 | - | expression tag |
| Trp 63 | Phe 63 | engineered mutation |
| PDB | External Database | Details |
|---|---|---|
| Thr 303 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly 17 | - | expression tag |
| Ser 18 | - | expression tag |
| Gly 56 | Arg 56 | SEE REMARK 999 |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 95509.8 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1173.1 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 3512.1 | |
| All* | Total formula weight | 100195.0 |
