3T1H
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 16s rRNA | polymer | 1513 | 491166.8 | 1 | GenBank (55771382) | Thermus thermophilus | |
| 2 | B (B) | 30S ribosomal protein S2 | polymer | 256 | 29317.7 | 1 | UniProt (P80371) Pfam (PF00318) | Thermus thermophilus | |
| 3 | C (C) | 30S ribosomal protein S3 | polymer | 239 | 26751.1 | 1 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) | Thermus thermophilus | |
| 4 | D (D) | 30S ribosomal protein S4 | polymer | 209 | 24373.4 | 1 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) | Thermus thermophilus | |
| 5 | E (E) | 30S ribosomal protein S5 | polymer | 162 | 17583.4 | 1 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) | Thermus thermophilus | |
| 6 | F (F) | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 1 | UniProt (Q5SLP8) Pfam (PF01250) | Thermus thermophilus | TS9 |
| 7 | G (G) | 30S ribosomal protein S7 | polymer | 156 | 18051.0 | 1 | UniProt (P17291) Pfam (PF00177) | Thermus thermophilus | |
| 8 | H (H) | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 1 | UniProt (Q5SHQ2) Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) | Thermus thermophilus | |
| 9 | I (I) | 30S ribosomal protein S9 | polymer | 128 | 14429.7 | 1 | UniProt (P62669) Pfam (PF00380) UniProt (by SIFTS) (P80374) | Thermus thermophilus | |
| 10 | J (J) | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 1 | UniProt (Q5SHN7) Pfam (PF00338) | Thermus thermophilus | |
| 11 | K (K) | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 1 | UniProt (P80376) Pfam (PF00411) | Thermus thermophilus | |
| 12 | L (L) | 30S ribosomal protein S12 | polymer | 132 | 14637.4 | 1 | UniProt (Q5SHN3) Pfam (PF00164) | Thermus thermophilus | |
| 13 | M (M) | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 1 | UniProt (P80377) Pfam (PF00416) | Thermus thermophilus | |
| 14 | N (N) | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 1 | UniProt (Q5SHQ1) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) | Thermus thermophilus | |
| 15 | O (O) | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 1 | UniProt (Q5SJ76) Pfam (PF00312) | Thermus thermophilus | |
| 16 | P (P) | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 1 | UniProt (Q5SJH3) Pfam (PF00886) | Thermus thermophilus | |
| 17 | Q (Q) | 30S ribosomal protein S17 | polymer | 105 | 12324.7 | 1 | UniProt (P24321) Pfam (PF00366) UniProt (by SIFTS) (P0DOY7) | Thermus thermophilus | |
| 18 | R (R) | 30S ribosomal protein S18 | polymer | 88 | 10244.3 | 1 | UniProt (P80382) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) | Thermus thermophilus | |
| 19 | S (S) | 30S ribosomal protein S19 | polymer | 93 | 10605.5 | 1 | UniProt (Q5SHP2) Pfam (PF00203) | Thermus thermophilus | |
| 20 | T (T) | 30S ribosomal protein S20 | polymer | 106 | 11722.1 | 1 | UniProt (P62661) Pfam (PF01649) UniProt (by SIFTS) (P80380) | Thermus thermophilus | |
| 21 | U (V) | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 1 | UniProt (Q5SIH3) Pfam (PF17070) | Thermus thermophilus | S31 |
| 22 | V (W) | mRNA A-site fragment | polymer | 3 | 942.7 | 1 | |||
| 23 | W (X) | tRNA ASL human Lys3 | polymer | 11 | 3708.4 | 1 | |||
| 24 | AA, AB, AC, AD, AE... (A, L, S, B) | MAGNESIUM ION | non-polymer | 24.3 | 185 | Chemie (MG) PubChem (888) | |||
| 25 | XG (A) | PAROMOMYCIN | non-polymer | 615.6 | 1 | Chemie (PAR) PubChem (165580) PubChem (6602492) PubChem (6713982) PubChem (9961808) PubChem (16757804) PubChem (16760604) PubChem (17757254) PubChem (20849281) PubChem (71191297) PubChem (23789070) PubChem (24096964) PubChem (24867526) PubChem (24867858) PubChem (25104843) PubChem (44120093) PubChem (44251565) PubChem (71188564) PubChem (44186758) PubChem (44663324) PubChem (45358711) PubChem (50989619) PubChem (66932615) PubChem (68032118) PubChem (4689) PubChem (14951) PubChem (24176) PubChem (70878598) PubChem (71751432) PubChem (73707499) PubChem (3040200) PubChem (91867972) PubChem (91972181) PubChem (94469268) PubChem (98048759) PubChem (98048761) PubChem (53486370) PubChem (5702262) PubChem (121292209) PubChem (6603975) PubChem (6604293) PubChem (122537356) PubChem (6710686) PubChem (124226135) PubChem (124464537) PubChem (9809147) PubChem (125040357) PubChem (125040359) PubChem (125121197) PubChem (129009945) PubChem (131841783) PubChem (132275078) PubChem (12313981) PubChem (58160567) PubChem (152952600) PubChem (162873319) PubChem (59361026) PubChem (59800245) PubChem (70793652) PubChem (70793824) PubChem (70795918) PubChem (71068776) PubChem (71072581) PubChem (71072592) PubChem (91151908) PubChem (94469269) PubChem (94469270) PubChem (94469271) PubChem (98048758) PubChem (98048760) PubChem (101739930) PubChem (118213779) PubChem (118705495) PubChem (122691713) PubChem (124226132) PubChem (124226133) PubChem (124226134) PubChem (124464538) PubChem (124761786) PubChem (124761787) PubChem (124761788) PubChem (124761789) PubChem (125040358) PubChem (125040360) PubChem (125121198) PubChem (129014632) PubChem (129014634) PubChem (129014635) PubChem (129313238) PubChem (134771120) PubChem (137404838) PubChem (161153506) PubChem (163199098) PubChem (164850471) PubChem (172091638) PubChem (173719997) | |||
| 26 | BH, ZG (N, D) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
A: 5 - 1516 (GenBank: 55771382)
| PDB | External Database | Details |
|---|---|---|
| U 1517 | - | insertion |
| U 1518 | - | insertion |
| U 1519 | - | insertion |
| C 1520 | - | insertion |
| U 1521 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 23 |
| Total formula weight | 785244.2 | |
| Non-Polymers* | Number of molecules | 188 |
| Total formula weight | 5242.9 | |
| All* | Total formula weight | 790487.1 |
