3T1F
Crystal structure of the mouse CD1d-Glc-DAG-s2 complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d1 | polymer | 285 | 32632.7 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
2 | B | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (mouse) | |
3 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
5 | A | (2S)-1-(alpha-D-glucopyranosyloxy)-3-(hexadecanoyloxy)propan-2-yl (11Z)-octadec-11-enoate | non-polymer | 757.1 | 1 | Chemie (3TF) | |||
6 | A | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
7 | water | water | 18.0 | 382 | Chemie (HOH) |
Sequence modifications
A: 1 - 279 (UniProt: P11609)
B: 1 - 99 (UniProt: P01887)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | variant |
His 280 | - | expression tag |
His 281 | - | expression tag |
His 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
His 285 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 85 | Asp 105 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 44293.0 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 1660.0 | |
All* | Total formula weight | 46377.4 |