3SKU
Herpes simplex virus glycoprotein D bound to the human receptor nectin-1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Glycoprotein D | polymer | 285 | 31625.0 | 3 | UniProt (Q991M3) Pfam (PF01537) In PDB | Human herpesvirus 1 (HHV-1) | |
| 2 | E, D, F | Poliovirus receptor-related protein 1 | polymer | 319 | 35824.2 | 3 | UniProt (Q15223) Pfam (PF07686) Pfam (PF08205) Pfam (PF13927) In PDB | Homo sapiens (human) | Herpes virus entry mediator C, Herpesvirus entry mediator C, HveC, Herpesvirus Ig-like receptor, HIgR, Nectin-1 |
| 3 | G, I, K, M | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 4 | In PDB GlyTouCan (G15407YE) | |||
| 4 | H, J, L | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 5 | B, C, E, D, F | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) |
Sequence modifications
E, D, F: 31 - 345 (UniProt: Q15223)
| PDB | External Database | Details |
|---|---|---|
| His 346 | - | expression tag |
| His 347 | - | expression tag |
| His 348 | - | expression tag |
| His 349 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 202347.6 | |
| Branched | Number of molecules | 7 |
| Total formula weight | 3619.4 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 1106.0 | |
| All* | Total formula weight | 207073.0 |
