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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

3SDI

Structure of yeast 20S open-gate proteasome with Compound 20

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, OProteasome component Y7polymer25027191.82UniProt (P23639)
Pfam (PF10584)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit Y7, Multicatalytic endopeptidase complex subunit Y7, Proteinase YSCE subunit 7
2B, PProteasome component Y13polymer23525968.32UniProt (P23638)
Pfam (PF10584)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit Y13, Multicatalytic endopeptidase complex subunit Y13, Proteinase YSCE subunit 13
3C, QProteasome component PRE6polymer24126903.32UniProt (P40303)
Pfam (PF10584)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PRE6, Multicatalytic endopeptidase complex subunit PRE6, Proteinase YSCE subunit PRE6
4D, RProteasome component PUP2polymer26028649.12UniProt (P32379)
Pfam (PF00227)
Pfam (PF10584)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PUP2, Multicatalytic endopeptidase complex subunit PUP2, Proteinase YSCE subunit PUP2
5E, SProteasome component PRE5polymer23325410.72UniProt (P40302)
Pfam (PF10584)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PRE5, Multicatalytic endopeptidase complex subunit PRE5, Proteinase YSCE subunit PRE5
6F, TProteasome component C1polymer24226734.32UniProt (P21242)
Pfam (PF10584)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit C1, Multicatalytic endopeptidase complex subunit C1, Proteinase YSCE subunit 1
7G, UProteasome component C7-alphapolymer24327316.02UniProt (P21243)
Pfam (PF10584)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit C7-alpha, Multicatalytic endopeptidase complex C7, Proteasome component Y8, Proteinase YSCE subunit 7, SCL1 suppressor protein
8H, VProteasome component PUP1polymer22223987.32UniProt (P25043)
Pfam (PF00227)
Pfam (PF12465)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PUP1, Multicatalytic endopeptidase complex subunit PUP1, Proteinase YSCE subunit PUP1
9I, WProteasome component PUP3polymer20422496.62UniProt (P25451)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PUP3, Multicatalytic endopeptidase complex subunit PUP3
10J, XProteasome component C11polymer19822545.72UniProt (P22141)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit C11, Multicatalytic endopeptidase complex subunit C11, Proteinase YSCE subunit 11
11K, YProteasome component PRE2polymer21223325.22UniProt (P30656)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PRE2, Multicatalytic endopeptidase complex subunit PRE2, Proteinase YSCE subunit PRE2
12L, ZProteasome component C5polymer22224883.92UniProt (P23724)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Multicatalytic endopeptidase complex subunit C5
13M, 1Proteasome component PRE4polymer23325945.52UniProt (P30657)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PRE4, Multicatalytic endopeptidase complex subunit PRE4, Proteinase YSCE subunit PRE4
14N, 2Proteasome component PRE3polymer19621517.22UniProt (P38624)
Pfam (PF00227)
In PDB		Saccharomyces cerevisiae (Baker's yeast)Macropain subunit PRE3, Multicatalytic endopeptidase complex subunit PRE3, Proteinase YSCE subunit PRE3
15F, G, H, I, K...MAGNESIUM IONnon-polymer24.320Chemie (MG)
16K, YN~4~-(2,2-dimethylpropyl)-N~1~-{(2S)-1-[(4-methylbenzyl)amino]-1-oxo-4-phenylbutan-2-yl}-N~2~-[(5-methyl-1,2-oxazol-3-yl)carbonyl]-L-aspartamidenon-polymer575.72BIRD (PRD_001071)
Chemie (3SD)
17K, Y2-(N-MORPHOLINO)-ETHANESULFONIC ACIDnon-polymer195.22Chemie (MES)
18waterwater18.01Chemie (HOH)
Sequence modifications
E, S: 4 - 233 (UniProt: P40302)
PDBExternal DatabaseDetails
Ala 127Tyr 123conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains28
Total formula weight705750.0
Non-Polymers*Number of molecules24
Total formula weight2028.0
All*Total formula weight707778.0
*Water molecules are not included.

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PDB entries from 2024-04-24

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