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3RF7

Crystal structure of an Iron-containing alcohol dehydrogenase (Sden_2133) from Shewanella denitrificans OS-217 at 2.12 A resolution

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Iron-containing alcohol dehydrogenasepolymer37542629.91UniProt (Q12MB1)
Pfam (PF00465)
Shewanella denitrificans
2B
(A)
UNKNOWN LIGANDnon-polymer1Chemie (UNL)
3C
(A)
NICOTINAMIDE-ADENINE-DINUCLEOTIDEnon-polymer663.41Chemie (NAD)
4D
(A)
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACIDnon-polymer238.31Chemie (EPE)
5E
(A)
FE (III) IONnon-polymer55.81Chemie (FE)
6F
(A)
NICKEL (II) IONnon-polymer58.71Chemie (NI)
7G, H, I, J
(A)
CHLORIDE IONnon-polymer35.54Chemie (CL)
8K, L
(A)
CALCIUM IONnon-polymer40.12Chemie (CA)
9M, N
(A)
DI(HYDROXYETHYL)ETHERnon-polymer106.12Chemie (PEG)
10O
(A)
waterwater18.0357Chemie (HOH)
Sequence modifications
A: 1 - 356 (UniProt: Q12MB1)
PDBExternal DatabaseDetails
Mse -18-expression tag
Gly -17-expression tag
Ser -16-expression tag
Asp -15-expression tag
Lys -14-expression tag
Ile -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
His -9-expression tag
His -8-expression tag
His -7-expression tag
Glu -6-expression tag
Asn -5-expression tag
Leu -4-expression tag
Tyr -3-expression tag
Phe -2-expression tag
Gln -1-expression tag
Gly 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight42629.9
Non-Polymers*Number of molecules13
Total formula weight1450.5
All*Total formula weight44080.4
*Water molecules are not included.

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PDB entries from 2025-06-25

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