3REK
2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E | Histone H3.2 | polymer | 135 | 15303.9 | 2 | UniProt (P84233) Pfam (PF00125) In PDB | Xenopus laevis (clawed frog common platanna platanna) | |
2 | B, F | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (P62799) Pfam (PF15511) In PDB | Xenopus laevis (clawed frog common platanna platanna) | |
3 | C, G | Histone H2A type1 | polymer | 129 | 13978.2 | 2 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) In PDB | Xenopus laevis (clawed frog common platanna platanna) | |
4 | D, H | Histone H2B 1.1 | polymer | 122 | 13524.8 | 2 | UniProt (P02281) Pfam (PF00125) In PDB | Xenopus laevis (clawed frog common platanna platanna) | H2B1 |
5 | I, J | DNA (146-MER) | polymer | 146 | 45054.8 | 2 | Homo sapiens | ||
6 | A, D | MANGANESE (II) ION | non-polymer | 54.9 | 2 | Chemie (MN) | |||
7 | I, J, A, B, E... | PLATINUM (II) ION | non-polymer | 195.1 | 40 | Chemie (PT) | |||
8 | C, D, G | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) |
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
C, G: 1 - 129 (UniProt: P06897)
D, H: 1 - 122 (UniProt: P02281)
PDB | External Database | Details |
---|---|---|
Ala 102 | Gly 103 | variant |
PDB | External Database | Details |
---|---|---|
Arg 99 | Gly 100 | variant |
Ser 123 | Ala 124 | variant |
PDB | External Database | Details |
---|---|---|
Thr 29 | Ser 33 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 198250.0 | |
Non-Polymers* | Number of molecules | 45 |
Total formula weight | 8201.2 | |
All* | Total formula weight | 206451.2 |