3REH
2.5 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E | Histone H3.2 | polymer | 135 | 15303.9 | 2 | UniProt (P84233) Pfam (PF00125) In PDB | Xenopus laevis (clawed frog common platanna platanna) | |
2 | B, F | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (P62799) Pfam (PF15511) In PDB | Xenopus laevis (clawed frog common platanna platanna) | |
3 | C, G | Histone H2A type 1 | polymer | 129 | 13978.2 | 2 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) In PDB | Xenopus laevis (clawed frog common platanna platanna) | |
4 | D, H | Histone H2B 1.1 | polymer | 122 | 13524.8 | 2 | UniProt (P02281) Pfam (PF00125) In PDB | Xenopus laevis (clawed frog common platanna platanna) | H2B1.1 |
5 | I | DNA (145-MER) | polymer | 145 | 44749.7 | 1 | Homo sapiens | ||
6 | J | DNA (145-MER) | polymer | 145 | 44740.6 | 1 | Homo sapiens | ||
7 | C, H | SULFATE ION | non-polymer | 96.1 | 3 | Chemie (SO4) | |||
8 | J, E, H, I | MANGANESE (II) ION | non-polymer | 54.9 | 15 | Chemie (MN) | |||
9 | water | water | 18.0 | 147 | Chemie (HOH) |
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
C, G: 1 - 129 (UniProt: P06897)
D, H: 1 - 122 (UniProt: P02281)
PDB | External Database | Details |
---|---|---|
Ala 102 | Gly 103 | variant |
PDB | External Database | Details |
---|---|---|
Arg 99 | Gly 100 | variant |
Ser 123 | Ala 124 | variant |
PDB | External Database | Details |
---|---|---|
Thr 29 | Ser 33 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 197630.6 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 1112.3 | |
All* | Total formula weight | 198742.9 |