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3REH

2.5 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13515303.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (clawed frog common platanna platanna)
2B, F
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (clawed frog common platanna platanna)
3C, G
(C, G)
Histone H2A type 1polymer12913978.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (clawed frog common platanna platanna)
4D, H
(D, H)
Histone H2B 1.1polymer12213524.82UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (clawed frog common platanna platanna)H2B1.1
5I
(I)
DNA (145-MER)polymer14544749.71Homo sapiens
6J
(J)
DNA (145-MER)polymer14544740.61Homo sapiens
7K, N, O
(C, H)
SULFATE IONnon-polymer96.13Chemie (SO4)
8AA, BA, L, M, P...
(J, E, H, I)
MANGANESE (II) IONnon-polymer54.915Chemie (MN)
9CA, DA, EA, FA, GA...
(A, B, C, D, E...)
waterwater18.0147Chemie (HOH)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103variant
C, G: 1 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100variant
Ser 123Ala 124variant
D, H: 1 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight197630.6
Non-Polymers*Number of molecules18
Total formula weight1112.3
All*Total formula weight198742.9
*Water molecules are not included.

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PDB entries from 2025-06-11

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