3RBD
Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, B) | DNA polymerase IV | polymer | 341 | 38945.4 | 2 | UniProt (Q97W02) Pfam (PF00817) Pfam (PF11798) Pfam (PF11799) | Sulfolobus solfataricus | Pol IV |
| 2 | B, E (D, H) | DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3') | polymer | 13 | 4046.6 | 2 | |||
| 3 | C, F (E, J) | DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') | polymer | 20 | 5942.9 | 2 | |||
| 4 | G, L (A, B) | 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 2 | Chemie (DGT) PubChem (177678918) PubChem (136110594) PubChem (135398599) PubChem (135402022) PubChem (135566345) PubChem (136254580) PubChem (136633653) PubChem (136828797) PubChem (136828798) PubChem (137226754) PubChem (137257907) PubChem (171699498) | |||
| 5 | H, I, J, M, N... (A, B) | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) PubChem (271) | |||
| 6 | K (D) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 1 | Chemie (EPE) PubChem (23831) | |||
| 7 | P, Q, R, S, T... (A, D, E, B, H...) | water | water | 18.0 | 120 | Chemie (HOH) |
Sequence modifications
A, B: 2 - 341 (UniProt: Q97W02)
| PDB | External Database | Details |
|---|---|---|
| Gly 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 97869.8 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 1493.1 | |
| All* | Total formula weight | 99363.0 |
