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3RBD

Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE DGT A 414
ChainResidue
AASP7
AASP105
ALYS159
AHOH343
AHOH360
AHOH399
ACA415
ACA416
DDOC814
EDC905
EME6906
APHE8
ATYR10
APHE11
ATYR12
AALA44
ATHR45
ATYR48
AARG51

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 415
ChainResidue
AASP7
AASP105
AGLU106
AHOH400
ADGT414
ACA416

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 416
ChainResidue
AASP7
APHE8
AASP105
ADGT414
ACA415

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 417
ChainResidue
AALA181
AILE186
AHOH342
AHOH388
DHOH2

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE EPE D 1
ChainResidue
ASER103
AILE104
AARG240
DHOH12
DHOH75
DHOH102
DDA812
DDG813
DDOC814
EDT908
EDA909

site_idAC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE DGT B 1414
ChainResidue
BASP1007
BPHE1008
BTYR1010
BPHE1011
BTYR1012
BVAL1032
BALA1044
BTHR1045
BTYR1048
BARG1051
BASP1105
BCA1415
BCA1416
BHOH1501
HDOC1814
JDC1905
JME61906

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 1415
ChainResidue
BASP1007
BASP1105
BGLU1106
BDGT1414
BCA1416
HHOH4

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 1416
ChainResidue
BASP1007
BPHE1008
BASP1105
BDGT1414
BCA1415

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 1417
ChainResidue
BHOH5
BHOH7
BALA1181
BILE1186
BHOH1512
BHOH1516
HHOH1514

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU1106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP1007
BASP1105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR1012

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PDB entries from 2024-07-17

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