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3QTC

Crystal structure of the catalytic domain of MmOmeRS, an O-methyl tyrosyl-tRNA synthetase evolved from Methanosarcina mazei PylRS, complexed with O-methyl tyrosine and AMP-PNP

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1APyrrolysyl-tRNA synthetasepolymer29033495.41UniProt (Q8PWY1)
Pfam (PF01409)
In PDB
Methanosarcina mazei (Methanosarcina frisia)Pyrrolysine-tRNA ligase, PylRS
2AMAGNESIUM IONnon-polymer24.32Chemie (MG)
3AO-methyl-L-tyrosinenon-polymer195.21Chemie (0A1)
4A1,2-ETHANEDIOLnon-polymer62.15Chemie (EDO)
5APHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERnon-polymer506.21Chemie (ANP)
6waterwater18.0235Chemie (HOH)
Sequence modifications
A: 185 - 454 (UniProt: Q8PWY1)
PDBExternal DatabaseDetails
Met 165-expression tag
Lys 166-expression tag
His 167-expression tag
His 168-expression tag
His 169-expression tag
His 170-expression tag
His 171-expression tag
His 172-expression tag
His 173-expression tag
His 174-expression tag
Gly 175-expression tag
Gly 176-expression tag
Leu 177-expression tag
Val 178-expression tag
Pro 179-expression tag
Arg 180-expression tag
Gly 181-expression tag
Ser 182-expression tag
His 183-expression tag
Gly 184-expression tag
Thr 302Ala 302engineered mutation
Val 346Asn 346engineered mutation
Trp 348Cys 348engineered mutation
Phe 384Tyr 384engineered mutation
Leu 401Val 401engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight33495.4
Non-Polymers*Number of molecules9
Total formula weight1060.4
All*Total formula weight34555.8
*Water molecules are not included.

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PDB entries from 2024-07-31

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