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3PV8

Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddTTP-dA in Closed Conformation

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, DDNA polymerase Ipolymer59267490.32UniProt (Q5KWC1)
Pfam (PF22619)
Pfam (PF00476)
In PDB
Geobacillus kaustophilus
2B, EDNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(2DT))-3')polymer92650.82
3C, FDNA (5'-D(*C*AP*TP*AP*AP*GP*AP*GP*TP*CP*AP*GP*G)-3')polymer134024.62
4A, DMAGNESIUM IONnon-polymer24.32Chemie (MG)
5A, D2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATEnon-polymer466.22Chemie (D3T)
6A, DSULFATE IONnon-polymer96.13Chemie (SO4)
7waterwater18.01823Chemie (HOH)
Sequence modifications
A, D: 285 - 876 (UniProt: Q5KWC1)
PDBExternal DatabaseDetails
Ala 598Asp 600engineered mutation
Tyr 710Phe 712engineered mutation
His 823Arg 825SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight148331.4
Non-Polymers*Number of molecules7
Total formula weight1269.1
All*Total formula weight149600.5
*Water molecules are not included.

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PDB entries from 2024-09-11

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