3PV8
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddTTP-dA in Closed Conformation
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0008408 | molecular_function | 3'-5' exonuclease activity |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0003677 | molecular_function | DNA binding |
D | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
D | 0006139 | biological_process | nucleobase-containing compound metabolic process |
D | 0006260 | biological_process | DNA replication |
D | 0006261 | biological_process | DNA-templated DNA replication |
D | 0008408 | molecular_function | 3'-5' exonuclease activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG A 1 |
Chain | Residue |
A | D3T201 |
A | ASP653 |
A | TYR654 |
A | ASP830 |
site_id | AC2 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE D3T A 201 |
Chain | Residue |
A | TYR654 |
A | GLN656 |
A | ILE657 |
A | GLU658 |
A | HIS682 |
A | ARG702 |
A | LYS706 |
A | TYR710 |
A | ASP830 |
A | HOH1311 |
B | 2DT29 |
B | HOH192 |
C | DA3 |
C | DA4 |
A | MG1 |
A | HOH120 |
A | HOH141 |
A | ARG615 |
A | ASP653 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 2 |
Chain | Residue |
A | ARG517 |
A | ASN573 |
D | LYS730 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG D 2 |
Chain | Residue |
D | D3T202 |
D | TYR654 |
D | ASP830 |
D | HOH1823 |
site_id | AC5 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE D3T D 202 |
Chain | Residue |
D | MG2 |
D | HOH26 |
D | HOH40 |
D | ARG615 |
D | TYR654 |
D | SER655 |
D | GLN656 |
D | ILE657 |
D | GLU658 |
D | HIS682 |
D | ARG702 |
D | LYS706 |
D | TYR710 |
D | ASP830 |
D | HOH1107 |
D | HOH1690 |
D | HOH1820 |
D | HOH1823 |
E | 2DT29 |
E | HOH136 |
F | DA3 |
F | DA4 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 1 |
Chain | Residue |
D | MET299 |
D | ALA300 |
D | ARG343 |
D | ARG677 |
D | HOH1451 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 D 3 |
Chain | Residue |
D | ARG629 |
D | ARG703 |
D | HOH956 |
Functional Information from PROSITE/UniProt
site_id | PS00447 |
Number of Residues | 20 |
Details | DNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnYGivYgiSdygL |
Chain | Residue | Details |
A | ARG702-LEU721 |