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3OJS

Snapshots of the large fragment of DNA polymerase I from Thermus Aquaticus processing C5 modified thymidines

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase I, thermostablepolymer54060937.01UniProt (P19821)Thermus aquaticusTaq polymerase 1
2B
(B)
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3')polymer123617.41
3C
(C)
DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')polymer164948.21
4D
(A)
2'-deoxy-5-[9-(3-{[4-(diethylamino)-4-oxobutanoyl]amino}propyl)-18-ethyl-5,8,14,17-tetraoxo-4,9,13,18-tetraazaicos-1-yn-1-yl]uridine 5'-(tetrahydrogen triphosphate)non-polymer1044.91Chemie (XJS)
5E, F, G, H, I...
(A, B, C)
GLYCEROLnon-polymer92.18Chemie (GOL)
6J, K
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
7L, N, O, S
(A, C)
TRIETHYLENE GLYCOLnon-polymer150.24Chemie (PGE)
8M, P, Q
(A)
ACETATE IONnon-polymer59.03Chemie (ACT)
9V, W, X
(A, B, C)
waterwater18.0331Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight69502.6
Non-Polymers*Number of molecules18
Total formula weight2608.1
All*Total formula weight72110.6
*Water molecules are not included.

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PDB entries from 2026-02-04

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