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3OBT

Crystal structure of Botulinum neurotoxin serotype D ligand binding domain in complex with N-Acetylneuraminic acid

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Botulinum neurotoxin type Dpolymer43450320.71UniProt (P19321)
Pfam (PF07953)
Pfam (PF07951)
Clostridium botulinumBoNT/D, Bontoxilysin-D, Botulinum neurotoxin D light chain, Botulinum neurotoxin D heavy chain
2B
(A)
N-acetyl-beta-neuraminic acidnon-polymer309.31Chemie (SLB)
3C, D, E, F, G...
(A)
GLYCEROLnon-polymer92.111Chemie (GOL)
4N
(A)
waterwater18.0317Chemie (HOH)
Sequence modifications
A: 863 - 1276 (UniProt: P19321)
PDBExternal DatabaseDetails
Met 856-expression tag
Arg 857-expression tag
Gly 858-expression tag
Ser 859-expression tag
Ala 860-expression tag
Met 861-expression tag
Ala 862-expression tag
Pro 1277-expression tag
Pro 1278-expression tag
Thr 1279-expression tag
Pro 1280-expression tag
Gly 1281-expression tag
Trp 1282-expression tag
Ser 1283-expression tag
His 1284-expression tag
Pro 1285-expression tag
Gln 1286-expression tag
Phe 1287-expression tag
Glu 1288-expression tag
Lys 1289-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight50320.7
Non-Polymers*Number of molecules12
Total formula weight1322.3
All*Total formula weight51643.0
*Water molecules are not included.

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PDB entries from 2025-07-23

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