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3O62

Nucleosome core particle modified with a cisplatin 1,3-cis-{Pt(NH3)2}2+-d(GpTpG) intrastrand cross-link

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13515303.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2A type 1polymer12813907.22UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (clawed frog common platanna platanna)
4D, H
(D, H)
Histone H2B 1.1polymer12213524.82UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (clawed frog common platanna platanna)H2B1.1
5I
(I)
DNA (146-MER)polymer14644739.71
6J
(J)
DNA (146-MER)polymer14645370.01
7K
(I)
Cisplatinnon-polymer300.01Chemie (CPT)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103conflict
C, G: 1 - 128 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100conflict
Ser 123Ala 124conflict
-Ala 127deletion
D, H: 1 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight198107.8
Non-Polymers*Number of molecules1
Total formula weight300.0
All*Total formula weight198407.9
*Water molecules are not included.

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PDB entries from 2025-06-11

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