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3N3Z

Crystal structure of PDE9A (E406A) mutant in complex with IBMX

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9Apolymer32638488.52UniProt (O76083)
Pfam (PF00233)
Homo sapiens (human)Phosphodiesterase 9A
2C, H
(A, B)
3-ISOBUTYL-1-METHYLXANTHINEnon-polymer222.22Chemie (IBM)
3D, F
(A, B)
ZINC IONnon-polymer65.42Chemie (ZN)
4E, G
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
5I
(B)
CHLORIDE IONnon-polymer35.51Chemie (CL)
6J, K
(A, B)
waterwater18.0104Chemie (HOH)
Sequence modifications
A, B: 181 - 506 (UniProt: O76083)
PDBExternal DatabaseDetails
Ala 406Glu 466engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight76977.1
Non-Polymers*Number of molecules7
Total formula weight659.4
All*Total formula weight77636.4
*Water molecules are not included.

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PDB entries from 2025-12-10

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