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3MZ2

Crystal structure of a Glycerophosphoryl diester phosphodiesterase (BDI_3922) from Parabacteroides distasonis ATCC 8503 at 1.55 A resolution

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Glycerophosphoryl diester phosphodiesterasepolymer29233783.32UniProt (A6LIT8)
Pfam (PF03009)
Parabacteroides distasonis
2C, D, E, F, G...
(A, B)
SULFATE IONnon-polymer96.112Chemie (SO4)
3H, I, J, K, U...
(A, B)
TETRAETHYLENE GLYCOLnon-polymer194.29Chemie (PG4)
4L
(B)
SODIUM IONnon-polymer23.01Chemie (NA)
5T
(B)
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOLnon-polymer354.41Chemie (PE4)
6AA, Z
(B, A)
waterwater18.0529Chemie (HOH)
Sequence modifications
A, B: 26 - 316 (UniProt: A6LIT8)
PDBExternal DatabaseDetails
Gly 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight67566.6
Non-Polymers*Number of molecules23
Total formula weight3278.2
All*Total formula weight70844.8
*Water molecules are not included.

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PDB entries from 2025-06-11

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