3MZ2
Crystal structure of a Glycerophosphoryl diester phosphodiesterase (BDI_3922) from Parabacteroides distasonis ATCC 8503 at 1.55 A resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0006580 | biological_process | ethanolamine metabolic process |
| A | 0006629 | biological_process | lipid metabolic process |
| A | 0006644 | biological_process | phospholipid metabolic process |
| A | 0008081 | molecular_function | phosphoric diester hydrolase activity |
| A | 0008889 | molecular_function | glycerophosphodiester phosphodiesterase activity |
| A | 0070291 | biological_process | N-acylethanolamine metabolic process |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0006580 | biological_process | ethanolamine metabolic process |
| B | 0006629 | biological_process | lipid metabolic process |
| B | 0006644 | biological_process | phospholipid metabolic process |
| B | 0008081 | molecular_function | phosphoric diester hydrolase activity |
| B | 0008889 | molecular_function | glycerophosphodiester phosphodiesterase activity |
| B | 0070291 | biological_process | N-acylethanolamine metabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 2 |
| Chain | Residue |
| A | HIS61 |
| A | ARG62 |
| A | HIS104 |
| A | HOH347 |
| A | HOH356 |
| A | HOH501 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 5 |
| Chain | Residue |
| A | MSE247 |
| A | GLU250 |
| A | ARG251 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 A 7 |
| Chain | Residue |
| A | LYS163 |
| A | PRO167 |
| A | MSE168 |
| A | HOH397 |
| A | HOH425 |
| A | HOH500 |
| A | HOH504 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 A 8 |
| Chain | Residue |
| A | ARG65 |
| A | ASP264 |
| A | LYS265 |
| A | ARG291 |
| A | HOH375 |
| A | HOH438 |
| A | HOH569 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 9 |
| Chain | Residue |
| A | ARG62 |
| A | ARG65 |
| A | LYS265 |
| A | HOH319 |
| A | HOH325 |
| B | LYS117 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE PG4 A 17 |
| Chain | Residue |
| A | ARG54 |
| A | LEU302 |
| A | HOH510 |
| A | HOH554 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE PG4 A 19 |
| Chain | Residue |
| A | LYS236 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE PG4 A 21 |
| Chain | Residue |
| A | PRO56 |
| A | THR84 |
| A | ALA296 |
| A | HOH363 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PG4 A 23 |
| Chain | Residue |
| A | ILE38 |
| A | ARG154 |
| A | GLN179 |
| A | TYR183 |
| B | ARG154 |
| site_id | BC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE NA B 1 |
| Chain | Residue |
| B | PE414 |
| site_id | BC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 B 3 |
| Chain | Residue |
| B | HIS61 |
| B | ARG62 |
| B | HIS104 |
| B | HOH335 |
| B | HOH351 |
| B | HOH501 |
| B | HOH553 |
| site_id | BC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 B 4 |
| Chain | Residue |
| A | LYS117 |
| B | ARG62 |
| B | ARG65 |
| B | LYS265 |
| B | HOH372 |
| B | HOH375 |
| B | HOH539 |
| B | HOH559 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 6 |
| Chain | Residue |
| B | LYS163 |
| B | PRO167 |
| B | MSE168 |
| B | HOH345 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 10 |
| Chain | Residue |
| B | MSE247 |
| B | GLU250 |
| B | ARG251 |
| site_id | BC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 B 11 |
| Chain | Residue |
| B | ARG65 |
| B | ASP264 |
| B | LYS265 |
| B | ARG291 |
| B | HOH386 |
| B | HOH440 |
| B | HOH536 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 12 |
| Chain | Residue |
| B | GLU135 |
| B | ARG291 |
| B | HOH471 |
| site_id | BC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 13 |
| Chain | Residue |
| B | ARG93 |
| B | LYS164 |
| B | HOH394 |
| site_id | BC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE PE4 B 14 |
| Chain | Residue |
| B | NA1 |
| B | ASP97 |
| B | SER98 |
| B | TRP123 |
| B | ARG170 |
| site_id | CC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE PG4 B 15 |
| Chain | Residue |
| B | PG416 |
| B | LYS236 |
| site_id | CC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE PG4 B 16 |
| Chain | Residue |
| B | PG415 |
| B | LYS236 |
| site_id | CC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE PG4 B 18 |
| Chain | Residue |
| A | ASP221 |
| B | HOH463 |
| site_id | CC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE PG4 B 20 |
| Chain | Residue |
| B | ILE55 |
| B | PRO56 |
| B | LEU57 |
| B | THR84 |
| B | ALA296 |
| B | SER300 |
| B | HOH420 |
| site_id | CC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE PG4 B 22 |
| Chain | Residue |
| B | SER112 |
| B | ASN113 |
| B | GLY114 |
| B | LYS132 |
| A | PRO202 |
| B | GLU109 |
