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3MYR

Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C, E, G
(A, C, E, G)
Hydrogenase (NiFe) small subunit HydApolymer26929141.94UniProt (D3RV29)
Pfam (PF01058)
Pfam (PF14720)
Allochromatium vinosum (Chromatium vinosum)
2B, D, F, H
(B, D, F, H)
Nickel-dependent hydrogenase large subunitpolymer56162048.84UniProt (D3RV26)
Pfam (PF00374)
Allochromatium vinosum (Chromatium vinosum)
3BA, CA, I, J, Q...
(G, A, C, E)
IRON/SULFUR CLUSTERnon-polymer351.68Chemie (SF4)
4DA, K, S, X
(G, A, C, E)
FE3-S4 CLUSTERnon-polymer295.84Chemie (F3S)
5FA, L
(G, A)
IMIDAZOLEnon-polymer69.12Chemie (IMD)
6EA, M, P, Y
(G, A, C, E)
CHLORIDE IONnon-polymer35.54Chemie (CL)
7GA, N, T, Z
(H, B, D, F)
NI-FE OXIDIZED ACTIVE CENTERnon-polymer210.64Chemie (NFV)
8AA, HA, O, U
(F, H, B, D)
MAGNESIUM IONnon-polymer24.34Chemie (MG)
9IA, JA, KA, LA, MA...
(A, B, C, D, E...)
waterwater18.01925Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight364763.1
Non-Polymers*Number of molecules26
Total formula weight5215.8
All*Total formula weight369978.9
*Water molecules are not included.

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PDB entries from 2025-12-10

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