3MYR
Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0008901 | molecular_function | ferredoxin hydrogenase activity |
A | 0009375 | cellular_component | ferredoxin hydrogenase complex |
A | 0051536 | molecular_function | iron-sulfur cluster binding |
B | 0005886 | cellular_component | plasma membrane |
B | 0008901 | molecular_function | ferredoxin hydrogenase activity |
B | 0016151 | molecular_function | nickel cation binding |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0046872 | molecular_function | metal ion binding |
C | 0008901 | molecular_function | ferredoxin hydrogenase activity |
C | 0009375 | cellular_component | ferredoxin hydrogenase complex |
C | 0051536 | molecular_function | iron-sulfur cluster binding |
D | 0005886 | cellular_component | plasma membrane |
D | 0008901 | molecular_function | ferredoxin hydrogenase activity |
D | 0016151 | molecular_function | nickel cation binding |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0046872 | molecular_function | metal ion binding |
E | 0008901 | molecular_function | ferredoxin hydrogenase activity |
E | 0009375 | cellular_component | ferredoxin hydrogenase complex |
E | 0051536 | molecular_function | iron-sulfur cluster binding |
F | 0005886 | cellular_component | plasma membrane |
F | 0008901 | molecular_function | ferredoxin hydrogenase activity |
F | 0016151 | molecular_function | nickel cation binding |
F | 0016491 | molecular_function | oxidoreductase activity |
F | 0046872 | molecular_function | metal ion binding |
G | 0008901 | molecular_function | ferredoxin hydrogenase activity |
G | 0009375 | cellular_component | ferredoxin hydrogenase complex |
G | 0051536 | molecular_function | iron-sulfur cluster binding |
H | 0005886 | cellular_component | plasma membrane |
H | 0008901 | molecular_function | ferredoxin hydrogenase activity |
H | 0016151 | molecular_function | nickel cation binding |
H | 0016491 | molecular_function | oxidoreductase activity |
H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE SF4 A 2001 |
Chain | Residue |
A | GLU15 |
A | GLY148 |
A | CYS149 |
A | PRO150 |
B | ARG1059 |
A | CYS16 |
A | THR17 |
A | GLY18 |
A | CYS19 |
A | ASP75 |
A | GLY113 |
A | THR114 |
A | CYS115 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SF4 A 2002 |
Chain | Residue |
A | HIS187 |
A | CYS190 |
A | ARG192 |
A | ARG193 |
A | CYS215 |
A | LEU216 |
A | CYS221 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE F3S A 2003 |
Chain | Residue |
A | THR226 |
A | ASN228 |
A | CYS230 |
A | TRP235 |
A | CYS249 |
A | LEU250 |
A | CYS252 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE IMD A 3002 |
Chain | Residue |
A | VAL143 |
A | ASN145 |
A | GLY176 |
A | HOH3657 |
G | ARG139 |
G | HOH5826 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CL A 2004 |
Chain | Residue |
A | PRO153 |
A | MET154 |
A | ASN236 |
A | ASP237 |
A | HOH3328 |
site_id | AC6 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE NFV B 2005 |
Chain | Residue |
B | CYS1061 |
B | CYS1064 |
B | VAL1067 |
B | HIS1068 |
B | ALA1485 |
B | PRO1486 |
B | ARG1487 |
B | LEU1490 |
B | VAL1508 |
B | PRO1509 |
B | SER1510 |
B | CYS1555 |
B | CYS1558 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 2006 |
Chain | Residue |
B | GLU1042 |
B | ALA1506 |
B | HIS1561 |
B | HOH2007 |
B | HOH2008 |
B | HOH2009 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CL C 2004 |
Chain | Residue |
C | PRO153 |
C | MET154 |
C | ASN236 |
C | ASP237 |
C | HOH3354 |
site_id | AC9 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE SF4 C 2001 |
Chain | Residue |
C | GLU15 |
C | CYS16 |
C | THR17 |
C | GLY18 |
C | CYS19 |
C | ASP75 |
C | GLY113 |
C | THR114 |
C | CYS115 |
C | GLY148 |
C | CYS149 |
C | PRO150 |
C | HOH5613 |
site_id | BC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SF4 C 2002 |
Chain | Residue |
C | ILE186 |
C | HIS187 |
C | CYS190 |
C | ARG192 |
C | ARG193 |
C | CYS215 |
C | LEU216 |
C | CYS221 |
site_id | BC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE F3S C 2003 |
Chain | Residue |
C | THR226 |
C | ASN228 |
C | CYS230 |
C | TRP235 |
C | PRO242 |
C | CYS249 |
C | LEU250 |
C | CYS252 |
D | LYS1211 |
site_id | BC3 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE NFV D 2005 |
Chain | Residue |
D | LEU1490 |
D | VAL1508 |
D | PRO1509 |
D | SER1510 |
D | CYS1555 |
D | CYS1558 |
D | CYS1061 |
D | CYS1064 |
D | VAL1067 |
D | HIS1068 |
D | ALA1485 |
D | PRO1486 |
D | ARG1487 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG D 2006 |
Chain | Residue |
D | GLU1042 |
D | ALA1506 |
D | HIS1561 |
D | HOH2007 |
D | HOH2008 |
D | HOH2009 |
site_id | BC5 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE SF4 E 2001 |
Chain | Residue |
E | GLU15 |
E | CYS16 |
E | THR17 |
E | GLY18 |
E | CYS19 |
E | ASP75 |
E | GLY113 |
E | THR114 |
E | CYS115 |
E | GLY148 |
E | CYS149 |
E | PRO150 |
E | HOH5628 |
F | ARG1059 |
F | HIS1214 |
site_id | BC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SF4 E 2002 |
Chain | Residue |
E | ILE186 |
E | HIS187 |
E | CYS190 |
E | ARG192 |
E | ARG193 |
E | CYS215 |
E | LEU216 |
E | CYS221 |
site_id | BC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE F3S E 2003 |
Chain | Residue |
E | THR226 |
E | ASN228 |
E | CYS230 |
E | TRP235 |
E | PRO242 |
E | CYS249 |
E | LEU250 |
E | CYS252 |
F | LYS1211 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL E 2004 |
Chain | Residue |
E | PRO153 |
E | MET154 |
E | ASN236 |
E | ASP237 |
site_id | BC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE NFV F 2005 |
Chain | Residue |
F | CYS1061 |
F | CYS1064 |
F | VAL1067 |
F | HIS1068 |
F | ALA1485 |
F | PRO1486 |
F | ARG1487 |
F | VAL1508 |
F | PRO1509 |
F | SER1510 |
F | CYS1555 |
F | CYS1558 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG F 2006 |
Chain | Residue |
F | GLU1042 |
F | ALA1506 |
F | HIS1561 |
F | HOH2007 |
F | HOH2008 |
F | HOH2009 |
site_id | CC2 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE SF4 G 2001 |
Chain | Residue |
G | GLU15 |
G | CYS16 |
G | THR17 |
G | GLY18 |
G | CYS19 |
G | ASP75 |
G | GLY113 |
G | THR114 |
G | CYS115 |
G | GLY148 |
G | CYS149 |
G | PRO150 |
H | HIS1214 |
site_id | CC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SF4 G 2002 |
Chain | Residue |
G | HIS187 |
G | CYS190 |
G | ARG192 |
G | ARG193 |
G | CYS215 |
G | LEU216 |
G | CYS221 |
site_id | CC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE F3S G 2003 |
Chain | Residue |
G | ASN228 |
G | CYS230 |
G | TRP235 |
G | TRP241 |
G | CYS249 |
G | LEU250 |
G | CYS252 |
H | LYS1211 |
site_id | CC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CL G 2004 |
Chain | Residue |
G | PRO153 |
G | MET154 |
G | ASN236 |
G | ASP237 |
G | HOH3053 |
site_id | CC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE IMD G 3001 |
Chain | Residue |
A | ARG139 |
A | HOH4142 |
G | MET135 |
G | VAL143 |
G | ASN145 |
G | GLY176 |
G | HOH4119 |
site_id | CC7 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE NFV H 2005 |
Chain | Residue |
H | CYS1061 |
H | CYS1064 |
H | VAL1067 |
H | HIS1068 |
H | ALA1485 |
H | PRO1486 |
H | ARG1487 |
H | LEU1490 |
H | VAL1508 |
H | PRO1509 |
H | SER1510 |
H | CYS1555 |
H | CYS1558 |
site_id | CC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG H 2006 |
Chain | Residue |
H | GLU1042 |
H | ALA1506 |
H | HIS1561 |
H | HOH2007 |
H | HOH2008 |
H | HOH2009 |
Functional Information from PROSITE/UniProt
site_id | PS00507 |
Number of Residues | 26 |
Details | NI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGIEtilkgrdprdawafvQRiCGVC |
Chain | Residue | Details |
B | ARG1039-CYS1064 |
site_id | PS00508 |
Number of Residues | 10 |
Details | NI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCIACav.H |
Chain | Residue | Details |
B | PHE1552-HIS1561 |