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3MNN

A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13515303.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2Apolymer11912941.12UniProt (Q6AZJ8)
Pfam (PF00125)
Pfam (PF16211)
UniProt (by SIFTS) (P06897)
Xenopus laevis (African clawed frog)
4D, H
(D, H)
Histone H2B 1.1polymer12513848.12UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
5I
(I)
DNA (145-MER)polymer14544749.71
6J
(J)
DNA (145-MER)polymer14544740.61
7K, P, T
(D, G, H)
SULFATE IONnon-polymer96.13Chemie (SO4)
8L
(E)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
9M, Q, U
(F, G, H)
RUTHENIUM IONnon-polymer101.13Chemie (RU)
10N, R, V
(F, G, H)
1-methyl-4-(1-methylethyl)benzenenon-polymer134.23Chemie (MML)
11O, S, W
(F, G, H)
1,3,5-triaza-7-phosphatricyclo[3.3.1.1~3,7~]decanenon-polymer157.23Chemie (PTW)
12AA, BA, CA, DA, EA...
(E, F, G, H, J...)
waterwater18.022Chemie (HOH)
Sequence modifications
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103SEE REMARK 999
D, H: -2 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33SEE REMARK 999
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight196203.0
Non-Polymers*Number of molecules13
Total formula weight1489.8
All*Total formula weight197692.8
*Water molecules are not included.

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PDB entries from 2025-06-11

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