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3MFI

DNA Polymerase Eta in Complex With a cis-syn Thymidine Dimer

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase etapolymer52058813.41UniProt (Q04049)
Pfam (PF00817)
Pfam (PF11799)
Saccharomyces cerevisiae (yeast)Radiation-sensitive protein 30
2B
(P)
5'-D(*GP*TP*CP*CP*TP*CP*CP*CP*CP*TP*(DOC))-3'polymer113205.11
3C
(T)
5'-D(*TP*AP*AP*(TTD)P*GP*AP*GP*GP*GP*GP*AP*GP*GP*AP*C)-3'polymer155027.31
4D
(A)
2'-DEOXYADENOSINE 5'-TRIPHOSPHATEnon-polymer491.21Chemie (DTP)
5E, F
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
6G, H
(A)
SULFATE IONnon-polymer96.12Chemie (SO4)
7I, J, K
(A, P, T)
waterwater18.0709Chemie (HOH)
Sequence modifications
A: 1 - 513 (UniProt: Q04049)
PDBExternal DatabaseDetails
Gly -6-expression tag
Pro -5-expression tag
Gly -4-expression tag
Gly -3-expression tag
Asp -2-expression tag
Pro -1-expression tag
His 0-expression tag
Ala 140Lys 140engineered mutation
Trp 144Ser 144engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight67045.8
Non-Polymers*Number of molecules5
Total formula weight731.9
All*Total formula weight67777.7
*Water molecules are not included.

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PDB entries from 2025-12-10

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