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3LD8

Structure of JMJD6 and Fab Fragments

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6polymer33439437.71UniProt (Q6NYC1)
Pfam (PF02373)
Homo sapiens (human)Histone arginine demethylase JMJD6, Peptide-lysine 5-dioxygenase JMJD6, Lysyl-hydroxylase JMJD6, JmjC domain-containing protein 6, Jumonji domain-containing protein 6, Phosphatidylserine receptor, Protein PTDSR
2B
(B)
antibody Fab fragment light chainpolymer22024100.01Cricetulus migratorius
3C
(C)
antibody Fab fragment heavy chainpolymer22124007.71Cricetulus migratorius
4D, E
(A)
MERCURY (II) IONnon-polymer200.62Chemie (HG)
5F, G, H, I, Y
(A, B)
GLYCEROLnon-polymer92.15Chemie (GOL)
6AA, BA, CA, DA, J...
(B, C, A)
SULFATE IONnon-polymer96.119Chemie (SO4)
7U
(A)
FE (III) IONnon-polymer55.81Chemie (FE)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight87545.4
Non-Polymers*Number of molecules27
Total formula weight2742.7
All*Total formula weight90288.1
*Water molecules are not included.

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PDB entries from 2025-07-30

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