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3L12

Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (YP_165505.1) from Silicibacter pomeroyi DSS-3 at 1.60 A resolution

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Putative Glycerophosphoryl diester phosphodiesterasepolymer31334884.52UniProt (Q5LX22)
Pfam (PF03009)
Silicibacter pomeroyi
2C, H, I
(A, B)
MAGNESIUM IONnon-polymer24.33Chemie (MG)
3D, E, F, J, K
(A, B)
CHLORIDE IONnon-polymer35.55Chemie (CL)
4G, L
(A, B)
UNKNOWN LIGANDnon-polymer2Chemie (UNL)
5M, N
(A, B)
waterwater18.0701Chemie (HOH)
Sequence modifications
A, B: 1 - 312 (UniProt: Q5LX22)
PDBExternal DatabaseDetails
Gly 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight69769.0
Non-Polymers*Number of molecules10
Total formula weight250.2
All*Total formula weight70019.2
*Water molecules are not included.

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PDB entries from 2025-07-16

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