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3L12

Crystal structure of Putative glycerophosphoryl diester phosphodiesterase (YP_165505.1) from Silicibacter pomeroyi DSS-3 at 1.60 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0006629biological_processlipid metabolic process
A0008081molecular_functionphosphoric diester hydrolase activity
A0046872molecular_functionmetal ion binding
B0006629biological_processlipid metabolic process
B0008081molecular_functionphosphoric diester hydrolase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 313
ChainResidue
AGLU49
AASP51
AGLU148
AHOH327
AHOH353

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 314
ChainResidue
ATHR108
AVAL109
AHOH659
BARG127

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 315
ChainResidue
AARG26
AARG113
AHOH401

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 316
ChainResidue
AARG18
ATHR312
AHOH404
AHOH476

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 313
ChainResidue
BGLU49
BASP51
BGLU148
BHOH323
BHOH364

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 314
ChainResidue
AHOH345
AHOH532
AHOH598
AHOH603
AHOH621
BHIS79

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 315
ChainResidue
BARG174
BHOH396
BHOH462

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 316
ChainResidue
BARG26
BARG113

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PDB entries from 2024-09-11

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