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3KL6

Discovery of Tetrahydropyrimidin-2(1H)-one derivative TAK-442: A potent, selective and orally active factor Xa inhibitor

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Coagulation Factor X heavy chainpolymer24127201.11UniProt (P00742)
Pfam (PF00089)
Homo sapiens (human)Stuart-Prower factor heavy chain
2B
(B)
Coagulation Factor X light chainpolymer576188.91UniProt (P00742)
Pfam (PF14670)
Homo sapiens (human)Stuart-Prower factor light chain
3C
(A)
1-(1-{(2S)-3-[(6-chloronaphthalen-2-yl)sulfonyl]-2-hydroxypropanoyl}piperidin-4-yl)tetrahydropyrimidin-2(1H)-onenon-polymer480.01Chemie (443)
4D, E, F, J
(A, B)
1,2-ETHANEDIOLnon-polymer62.14Chemie (EDO)
5G, H, I
(A)
CALCIUM IONnon-polymer40.13Chemie (CA)
6K, L
(A, B)
waterwater18.0204Chemie (HOH)
Sequence modifications
B: -2 - 51 (UniProt: P00742)
PDBExternal DatabaseDetails
Gly -5-expression tag
Arg -4-expression tag
Ala -3-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight33390.0
Non-Polymers*Number of molecules8
Total formula weight848.5
All*Total formula weight34238.5
*Water molecules are not included.

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PDB entries from 2025-06-11

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