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3KKT

Crystal structure of human PDE4b with 5-[3-[(1S,2S,4R)-Bicyclo[2.2.1]hept-2-yloxy]-4-methoxyp henyl]tetrahydro-2(1H)-pyrimidinone reveals ordering of the C-terminal helix residues 502-509.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BcAMP-specific 3',5'-cyclic phosphodiesterase 4Bpolymer39845655.22UniProt (Q07343)
Pfam (PF00233)
In PDB
Homo sapiens (human)DPDE4, PDE32
2A, BZINC IONnon-polymer65.42Chemie (ZN)
3A, B5-{3-[(1S,2S,4R)-bicyclo[2.2.1]hept-2-yloxy]-4-methoxyphenyl}tetrahydropyrimidin-2(1H)-onenon-polymer316.42Chemie (0CP)
4A, BMAGNESIUM IONnon-polymer24.32Chemie (MG)
5B2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer282.31Chemie (B3P)
6waterwater18.060Chemie (HOH)
Sequence modifications
A, B: 152 - 528 (UniProt: Q07343)
PDBExternal DatabaseDetails
Met 131-expression tag
Gly 132-expression tag
Ser 133-expression tag
Ser 134-expression tag
His 135-expression tag
His 136-expression tag
His 137-expression tag
His 138-expression tag
His 139-expression tag
His 140-expression tag
Ser 141-expression tag
Ser 142-expression tag
Gly 143-expression tag
Leu 144-expression tag
Val 145-expression tag
Pro 146-expression tag
Arg 147-expression tag
Gly 148-expression tag
Ser 149-expression tag
His 150-expression tag
Met 151-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight91310.4
Non-Polymers*Number of molecules7
Total formula weight1094.6
All*Total formula weight92405.0
*Water molecules are not included.

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PDB entries from 2024-07-10

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