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3KH2

Crystal structure of the P1 bacteriophage Doc toxin (F68S) in complex with the Phd antitoxin (L17M/V39A). Northeast Structural Genomics targets ER385-ER386

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D
(A, B, C, D)
Death on curing proteinpolymer13414708.14UniProt (Q06259)
Pfam (PF02661)
Bacteriophage P1
2E, F, G, H
(E, F, G, H)
Prevent host death proteinpolymer738226.94UniProt (Q06253)
Pfam (PF02604)
Bacteriophage P1
3I
(A)
CHLORIDE IONnon-polymer35.51Chemie (CL)
4J, M
(A, B)
2-HYDROXYETHYL DISULFIDEnon-polymer154.32Chemie (HED)
5K, L, Q
(B, H)
GLYCEROLnon-polymer92.13Chemie (GOL)
6N, O, P, R
(E, F, G, H)
PHOSPHATE IONnon-polymer95.04Chemie (PO4)
7S, T, U, V, W...
(A, B, C, D, E...)
waterwater18.093Chemie (HOH)
Sequence modifications
A, B, C, D: 2 - 126 (UniProt: Q06259)
PDBExternal DatabaseDetails
Mse 1-initiating methionine
Ser 68Phe 68engineered mutation
Leu 127-expression tag
Glu 128-expression tag
His 129-expression tag
His 130-expression tag
His 131-expression tag
His 132-expression tag
His 133-expression tag
His 134-expression tag
E, F, G, H: 1 - 73 (UniProt: Q06253)
PDBExternal DatabaseDetails
Mse 17Leu 17engineered mutation
Ala 39Val 39engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains8
Total formula weight91739.8
Non-Polymers*Number of molecules10
Total formula weight1000.1
All*Total formula weight92739.9
*Water molecules are not included.

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PDB entries from 2025-06-18

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