3JD7
The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 1 | Capsid protein VP1 | polymer | 281 | 31380.1 | 1 | UniProt (Q66282) Pfam (PF22663) UniProt (by SIFTS) (Q5UEA3) In PDB | Coxsackievirus B3 | P1D, Virion protein 1 |
| 2 | 2 | Capsid protein VP2 | polymer | 263 | 28877.6 | 1 | UniProt (Q66282) Pfam (PF00073) UniProt (by SIFTS) (Q5UEA3) In PDB | Coxsackievirus B3 | P1B, Virion protein 2 |
| 3 | 3 | Capsid protein VP3 | polymer | 238 | 26198.7 | 1 | UniProt (Q66282) Pfam (PF00073) UniProt (by SIFTS) (Q5UEA3) In PDB | Coxsackievirus B3 | P1C, Virion protein 3 |
| 4 | 4 | Capsid protein VP4 | polymer | 68 | 7379.1 | 1 | UniProt (Q66282) Pfam (PF02226) UniProt (by SIFTS) (Q5UEA3) In PDB | Coxsackievirus B3 | P1A, Virion protein 4 |
| 5 | 1 | PALMITIC ACID | non-polymer | 256.4 | 1 | Chemie (PLM) |
Sequence modifications
2: 1 - 263 (UniProt: Q66282)
3: 1 - 238 (UniProt: Q66282)
| PDB | External Database | Details |
|---|---|---|
| Thr 151 | Ser 220 | conflict |
| Val 245 | Ile 314 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Glu 234 | Gln 566 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 93835.4 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 256.4 | |
| All* | Total formula weight | 94091.8 |
